Containerised applications on the HPC (RStan example)
Singularity is a container platform. It allows you to create and run containers that package up pieces of software in a way that is portable and reproducible...
Posts by Tag
- R 4
- workflow 3
- package 2
- hpc 2
- singularity 2
- p5js 1
- diagnostics 1
- learning 1
- webapp 1
- CI/CD 1
- bioinformatics 1
- rosalind 1
- optimisation 1
- statistics 1
- HPC 1
R
MonitouR 🐮
Introducing MonitauR, a package to easily and remotely monitor the progress of your R scripts.
RStudio server on the HPC
This post details how to get RStudio server running on the compute nodes of the HPC. This is achieved though a combination of singularity and ssh commands. ...
Vectorising chisq.test()
Writing fast code is actually about writing efficient code. Writing code in R doesn’t magically make electrons slower. The perceived slowness of higher-level...
workflow
Containerised applications on the HPC (RStan example)
Singularity is a container platform. It allows you to create and run containers that package up pieces of software in a way that is portable and reproducible...
RStudio server on the HPC
This post details how to get RStudio server running on the compute nodes of the HPC. This is achieved though a combination of singularity and ssh commands. ...
Using VScode to access the HPC
One of the biggest hurdles to using a the high performance computer (HPC) at JCU is the user interface. Researchers have to ssh into the HPC via the command ...
package
MonitouR 🐮
Introducing MonitauR, a package to easily and remotely monitor the progress of your R scripts.
pyoinformatics 🐍
Introducing pyoinformatics, a simple bioinformatics package. pip install pyoinformatics I’m working on the bioinformatics problems on rosalind.info. Some o...
hpc
Containerised applications on the HPC (RStan example)
Singularity is a container platform. It allows you to create and run containers that package up pieces of software in a way that is portable and reproducible...
Using VScode to access the HPC
One of the biggest hurdles to using a the high performance computer (HPC) at JCU is the user interface. Researchers have to ssh into the HPC via the command ...
singularity
Containerised applications on the HPC (RStan example)
Singularity is a container platform. It allows you to create and run containers that package up pieces of software in a way that is portable and reproducible...
RStudio server on the HPC
This post details how to get RStudio server running on the compute nodes of the HPC. This is achieved though a combination of singularity and ssh commands. ...
p5js
Interactive diagnostic test statistics
I’ve been watching a lot of coding train, and it has got me keen to do something with the javascipt library P5.js. My housemate has been learning about diagn...
diagnostics
Interactive diagnostic test statistics
I’ve been watching a lot of coding train, and it has got me keen to do something with the javascipt library P5.js. My housemate has been learning about diagn...
learning
Interactive diagnostic test statistics
I’ve been watching a lot of coding train, and it has got me keen to do something with the javascipt library P5.js. My housemate has been learning about diagn...
webapp
Interactive diagnostic test statistics
I’ve been watching a lot of coding train, and it has got me keen to do something with the javascipt library P5.js. My housemate has been learning about diagn...
CI/CD
pyoinformatics 🐍
Introducing pyoinformatics, a simple bioinformatics package. pip install pyoinformatics I’m working on the bioinformatics problems on rosalind.info. Some o...
bioinformatics
pyoinformatics 🐍
Introducing pyoinformatics, a simple bioinformatics package. pip install pyoinformatics I’m working on the bioinformatics problems on rosalind.info. Some o...
rosalind
pyoinformatics 🐍
Introducing pyoinformatics, a simple bioinformatics package. pip install pyoinformatics I’m working on the bioinformatics problems on rosalind.info. Some o...
optimisation
Vectorising chisq.test()
Writing fast code is actually about writing efficient code. Writing code in R doesn’t magically make electrons slower. The perceived slowness of higher-level...
statistics
Vectorising chisq.test()
Writing fast code is actually about writing efficient code. Writing code in R doesn’t magically make electrons slower. The perceived slowness of higher-level...
HPC
RStudio server on the HPC
This post details how to get RStudio server running on the compute nodes of the HPC. This is achieved though a combination of singularity and ssh commands. ...