Auto-Scope: An open source whole slide scanner
I’m feeling nostalgic for the time my Python friend Eike and I built a whole slide scanner from scratch. It was a fun project that combined my interests in p...
Recent Posts
Run RStudio on Unimelb Spartan HPC
I’ve written a few different posts and tutorials about how to run RStudio on an HPC using RStudio Server. In this post, I’ll detail the process specifically ...
52 Apps in 2025
In 2025 I set my self the challenge of building 52 apps
Clockor2: Inferring global and local strict molecular clocks using root-to-tip regression
Our webapp for root-to-tip regression Clockor2 (clockor2.github.io) has just been published in Systematic Biology . Clockor2 is a webapp for performing root...
Using BEAST 2.7 with Snakemake
BEAST 2.7 is out and promises to be better than ever. However, it’s not available on conda yet. This post will show you how to use BEAST 2.7 with Snakemake t...