Your Virologist Friend
Here are a few post I’ve made about the ongoing pandemic. 20th of October 2021 - Vaccines We are marching towards reopening, however, when we do everything...
Posts by Category
blog
Integrating qsub with RStudio
In a previous post, I explained how to run RStudio on the compute nodes of the HPC. I am going to continue on this theme and explore some of the interesting ...
Containerised applications on the HPC (RStan example)
Singularity is a container platform. It allows you to create and run containers that package up pieces of software in a way that is portable and reproducible...
RStudio on the HPC
This post details how to get RStudio server running on the compute nodes of the HPC. This is achieved though a combination of singularity and ssh commands. ...
Vectorising chisq.test()
Writing fast code is actually about writing efficient code. Writing code in R doesn’t magically make electrons slower. The perceived slowness of higher-level...
Using VScode to access the HPC
One of the biggest hurdles to using a high performance computer (HPC) is the user interface. Researchers have to ssh into the HPC via the command line. This ...
Interactive diagnostic test statistics
I’ve been watching a lot of coding train, and it has got me keen to do something with the javascipt library P5.js. My housemate has been learning about diagn...
init blog
Hi! This is the first post on my blog. Hopefully more to follow :)
project
🐙🐁 BEASTIARY 🐁🐙
Introducing Beastiary, a package designed for visualising and analysing MCMC trace files generated from Bayesian phylogenetic analyses.
monitauR 🐮
Introducing MonitauR, a package to easily and remotely monitor the progress of your R scripts.
pyoinformatics 🐍
Introducing pyoinformatics, a simple bioinformatics package. pip install pyoinformatics I’m working on the bioinformatics problems on rosalind.info. Some o...
Interactive diagnostic test statistics
I’ve been watching a lot of coding train, and it has got me keen to do something with the javascipt library P5.js. My housemate has been learning about diagn...