Phylogenetic Tree Additivity Diagnostics
https://www.tenderisthebyte.com/blog/2022/08/31/neighbor-joining-trees
Input alignment (FASTA)
SNP distance
p-distance
Kimura 2-parameter
Handle gaps:
Pairwise exclude gap or N sites
Treat gaps and N as mismatches
Tree method:
Neighbor-Joining (NJ)
UPGMA
Decimals:
Label branch lengths on tree
Compute additivity diagnostics
Tolerance (ε):
Build Tree
Load example
Upload file
Download Newick
Run self tests
Outputs
Taxa: 0
Length: 0
Model: p
Residuals matrix
Distance matrix
Additivity diagnostics
Tree
Newick
Self test results